PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g10200.5
Common NameLR48_Vigan10g157600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 152aa    MW: 17120.4 Da    PI: 6.276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g10200.5genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-201665355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr+++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++++g
  Vang03g10200.5 16 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAALAMRG 65
                    9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-141565IPR001471AP2/ERF domain
PROSITE profilePS5103223.421573IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-311574IPR001471AP2/ERF domain
SMARTSM003802.0E-361579IPR001471AP2/ERF domain
CDDcd000181.81E-191674No hitNo description
PRINTSPR003674.1E-111627IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-231675IPR016177DNA-binding domain
PRINTSPR003674.1E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
LSHGSSVAEA EVSVSYRGVR RRPWGKYAAE IRDSTRNGVR VWLGTFDTAE AAALAYDQAA  60
LAMRGSMAVL NFPAEMVWQS LRKMEYGFDQ GCSPVLELKK RHSINRKWER NKLKNKVQEE  120
EEEGVSQNVM VLEDLGAEYL EHLLTVSQDM I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-271673663ATERF1
3gcc_A1e-271673663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491591.13e-90PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC84e-54ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9VLR51e-110A0A0L9VLR5_PHAAN; Uncharacterized protein
STRINGGLYMA19G43815.16e-61(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-44ethylene response factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]